About EMMA - References
2004
Auwerx J, Avner P, Baldock R, Ballabio A, Balling R, Barbacid M, Berns A, Bradley A, Brown S, Carmeliet P, Chambon P, Cox R, Davidson D, Davies K, Duboule D, Forejt J, Granucci F, Hastie N, de Angelis MH, Jackson I, Kioussis D, Kollias G, Lathrop M, Lendahl U, Malumbres M, von Melchner H, Muller W, Partanen J, Ricciardi-Castagnoli P, Rigby P, Rosen B, Rosenthal N, Skarnes B, Stewart AF, Thornton J, Tocchini-Valentini G, Wagner E, Wahli W, Wurst W. The European dimension for the mouse genome mutagenesis program. Nat Genet. 2004 Sep;36(9):925-7.
PMID: 15340424Marazziti D, Golini E, Mandillo S, Magrelli A, Witke W, Matteoni R, Tocchini-Valentini GP. Altered dopamine signaling and MPTP resistance in mice lacking the Parkinson's disease-associated GPR37/parkin-associated endothelin-like receptor. Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):10189-94. Epub 2004 Jun 24.
PMID: 15218106Scavizzi F, Raspa M. Tissue distribution and duration of mouse hepatitis virus in naturally infected immunocompetent ICR (CD-1) and immunodeficient athymic nude-nu mouse strains used for ovarian transplantation and in vitro fertilization. Lab Anim. 2004 Apr;38(2):189-99.
PMID: 15070459
2003
Deidda G, Rossi N, Tocchini-Valentini GP. An archaeal endoribonuclease catalyzes cis- and trans- nonspliceosomal splicing in mouse cells. Nat Biotechnol. 2003 Dec;21(12):1499-504. Epub 2003 Nov 02.
PMID: 14595336
2001
Fruscoloni P, Baldi MI, Tocchini-Valentini GP. Cleavage of non-tRNA substrates by eukaryal tRNA splicing endonucleases. EMBO Rep. 2001 Mar;2(3):217-21.
PMID: 11266363Barreto, V., Marques, R., and Demengeot, J. Early death and severe lymphopenia caused by ubiquitous expression of the Rag1 and Rag2 genes in mice. (2001) Eur. J. Immunol. 31: 3763-3772.
Bekker, L.G., Freeman, S., Murray, P.J., Ryffel, B., and Kaplan, G. TNF-alpha controls intracellular mycobacterial growth by both inducible nitric-oxide synthase-dependent and inducible nitric oxide synthase-independent pathways. (2001) J. Immunol. 166: 6728-6734.
Carvalho, T., Santos, T., Demengeot, J., and Vieira, P. Arrested B lymphopoesis and persistence of activated B cells in adult IL-7 -/- mice. (2001) J. Exp. Med. 194: 1141-1150.
Coutinho, A., Hori, S., Carvalho, T., Caramalho, I., and Demengeot, J. Regulatory T cells: the physiology of autoreactivity in dominant tolerance and "quality control" of immune responses. (2001) Immunol. Rev. 182: 89-98.
Duffield, J.S., Ware, C.F., Ryffel, B., and Savill, J. Suppression by apoptotic cells defines tumor necrosis factor-mediated induction of glomerular mesangial cell apoptosis by activated macrophages. (2001) Am. J. Pathol. 159: 1397-1404.
Marazziti, D., Golini, E., Magrelli, A., Matteoni, R., and Tocchini-Valentini, G.P. Genomic analysis of GPR37 and related orphan G-protein coupled receptor genes highly expressed in the mammalian brain. (2001) Current Genomics 2: 253-260.
LeHir, M., Ryffel, B., and Schatzmann, U. IL-12-independent, IFN-gamma-independent glomerulonephritis. (2001) Kidney Blood Press Res. 24: 27-32.
Matteoni, R., Raspa, M., Scavizzi, F., Tocchini-Valentini, G.P., Bouquin, S., Lissarrague, A., Sengerova, J., and Rodriguez-Tomé, P. The European Mouse Mutant Archive Resource Database. Abstract, Third Annual Conference: Integrated Bioinformatics Europe, Zurich, Switzerland, January 24-26, 2001.
Post, F.A., Manca, C., Neyrolles, O., Ryffel, B., Young, D.B., and Kaplan, G. Mycobacterium tuberculosis 19- kilodalton lipoprotein inhibits Mycobacterium smegmatis-induced cytokine production by human macrophages in vitro. (2001) Infect. Immun. 69: 1433-1439;
Ryffel B., Quesniaux, V.J.F., and Moser R. The use of transgenic mice to investigate drug hypersensitivity. (2001) Toxicology 158:75-83.
2000
Apelqvist, A., Li, H., Sommer, L., Beatus, P., Anderson, D., Honjo, T., Hrabé de Angelis, M., Lendahl, U., and Edlund, H. Notch-signalling controls pancreatic cell differentiation. (1999) Nature 400(6747): 877-881. Arsenijevic, D., Garcia, I., Vesin, C., Arsenvijevc, C., Seydoux, J., Girardier, L., Ryffel, B., Dulloo, A., and Richard, D. Differential role of tumor necrosis factor-alpha and interferon-gamma in hypermetabolic and anorectic response induced by LPS. (2000) Eur. Cytokine Netw. 11: 662-668.
Nolan, P.M., Peters, J., Strivens, M., Rogers, D., Hagan, J., Spurr, N., Gray, I.C., Vizor, L., Brooker, D., Whitehill, E., Washbourne, R., Hough, T., Greenaway, S., Hewitt, M., Liu, X., McCormack, S., Pickford, K., Selley, R., Wells, C., Tymowska-Lalanne, Z., Roby, P., Glenister, P., Thornton, C., Thaung, C., Stevenson, J.A., Arkell, R., Mburu, P., Hardisty, R., Kiernan, A., Erven, A., Steel, K.P., Voegeling, S., Guenet, J.L., Nickols, C., Sadri, R., Nasse, M., Isaacs, A., Davies, K., Browne, M., Fisher, E.M., Martin, J., Rastan, S., Brown, S.D., and Hunter, J. A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse. (2000) Nature Genetics 25(4):440-443.
Coutinho, A. Germ-line selection ensures embryonic autoreactivity and a positive discrimination of self mediated by supraclonal mechanisms. (2000) Semin. Immunol. 12(3):205-213.
Glenister, P.H., and Thornton, C.E. Cryoconservation ó Archiving for the Future. (2000) Mammalian Genome 11(7): 565-571.
Glenister, P.H., Whittingham, D.G., and Wood, M.J. Genome cryopreservation: a valuable contribution to mammalian genetic research.(2000) Genet. Res. 56: 253-258.
Fesel, C., and Coutinho, A. Serum IgM repertoire reactions to MBP/CFA immunisation reflect the individual status of EAE susceptibility. (2000) J. Autoimmunity 14(4): 319-324.
Garcia, I., Guler, R., Vesin, D., Olleros, M., Vasalli, P., Chvatchko, Y., Jacobs, M., Ryffel, B., and Lethal, M. Bovis BCG infection in nitric oxide deficient mice: cellular immune response modulated by nos2. (2000) Lab. Invest. 80: 1385-1397.
Hoelscher, C., Mohrs, M., Dai, W.J., Kohler, G., Ryffel, B., Schaub, G.A., Mossmann, H., and Brombacher, F. Tumor necrois factor alpha-mediated toxic shock in Trypanosoma cruzi-infected interleukin-10 deficient mice. (2000) Infect. Immun. 68: 4075-4075.
Jacobs, M., Brown, N., Allie, N., Chetty, K., and Ryffel, B. Tumor necrosis factor receptor 2 plays a minor role for mycobacterial immunity. (2000) Pathobiology 68: 68-75.
Jacobs, M., Brown, N., Allie, N., Guler, R., and Ryffel, B. Increased resistance to mycobacterial infection in the absence of interleukin 10. (2000) Immunology 100: 494-501.
Jacobs, M., Marino, M.W., Brown, N., Abel, B., Bekker, L.G., Quesniaux, V., Fick, L., and Ryffel, B. Correction of defective host response to Mycobacterium bovis BCG infection in TNF-deficient mice by bone marrow transplantation. (2000) Laboratory Investigations 80: 901-914.
Hrabé de Angelis, M.H., Flaswinkel, H., Fuchs, H., Rathkolb, B., Soewarto, D., Marschall, S., Heffner, S., Pargent, W., Wuensch, K., Jung, M., Reis, A., Richter, T., Alessandrini, F., Jakob, T., Fuchs, E., Kolb, H., Kremmer, E., Schaeble, K., Rollinski, B., Roscher, A., Peters, C., Meitinger, T., Strom, T., Steckler, T., Holsboer, F., Klopstock, T., Gekeler, F., Schindewolf, C., Jung, T., Avraham, K., Behrendt, H., Ring, J., Zimmer, A., Schughart, K., Pfeffer, K., Wolf, E., Balling, R., and Balling, R. Genome wide large scale production of mutant mice by ENU mutagenesis. (2000) Nature Genetics 25(4): 444-447.
Reina-San-Martin, B., Degrave, W., Rougeot, C., Cosson, A., Chamond, N., Cordeiro-Da-Silva, A., Arala-Chaves, M., Coutinho, A., and Minoprio, P. A B-cell mitogen from a pathogenic trypanosome is a eukaryotic proline racemase. (2000) Nature Medicine 6(8): 890-897.
1999
Scarabino, D., Crisari, A., Lorenzini, S., Williams, K. and Tocchini-Valentini, G.P. tRNA prefers to kiss. (1999) EMBO Journal 18(16): 4571-4578.
Barrillot, E., Lesser, U., Lijnzaad, P., Cussat-Blanc, C., Jungfer, K., Guyon, F., Vaysseix, G., Helgesen, C., and Rodriguez-Tomé, P. A proposal for a standard CORBA interface for genome maps. (1999) Bioinformatics 15(2):157-169.
Clark, M.S. Comparative genomics: the key to understanding the Human Genome Project. (1999) BioEssays 21: 121-130.
Thornton, C.E., Brown, S.D.M., and Glenister, P.H. Large numbers of mice established by in vitro fertilisation with cryopreserved spermatozoa: implications and applications for genetic resource banks, mutagenesis screens and mouse backcrosses. (1999) Mammalian Genome 10: 987-992.
Glenister, P.H., and Rall, W.F. Cryopreservation and rederivation of embryos and gametes. In: Mouse Genetics and Transgenics: A Practical Approach. C.A. Abbot and I. Jackson eds. Oxford University Press, Oxford (1999).
Marschall, S., and Hrabé de Angelis, M. Cryopreservation of mouse spermatozoa - double your mouse space. (1999) Trends in Genetics 15(4): 128-131.
Marschall, S., Huffstadt, U., Balling, R., and Hrabé de Angelis, M. Reliable recovery of inbred mouse lines using cryopreserved spermatozoa. (1999) Mammalian Genome 10(8): 773-776.
Rodriguez-Tomé, P, and Lijnzaad, P. The Radiation Hybrid Database. (1999) Nucleic Acids Research 27(1):115-118.
PMID:9847154
1998
Fabbri S, Fruscoloni P, Bufardeci E, Di Nicola Negri E, Baldi MI, Attardi DG, Mattoccia E, Tocchini-Valentini GP. Conservation of substrate recognition mechanisms by tRNA splicing endonucleases. Science. 1998 Apr 10;280(5361):284-6.
PMID: 9535657Tkachuk, M., Bolliger, S., Ryffel, B., Pluschke, G., Banks, T.A., Gisler, R.H., and Kosco-Vilbois, M.H. Crucial role of TNFR1 expression on non hematopoietic cells for B cell localization within the splenic white pulp. (1998) Journal of Experimental Medicine 187(4): 469-477.
Vasconcellos, R., Nobrega, A., Haury, M., Viale, A.-C. and Coutinho, A. Genetic control of natural antibody repertoires. I. IgH, MHC and TCRß Loci. (1998) European Journal of Immunology 28(3): 1104-1115.
Scarabino D, Crisari A, Lorenzini S, Williams K, Tocchini-Valentini GP. tRNA prefers to kiss. EMBO J. 1999 Aug 16;18(16): 4571-8.
PMID: 10449422Deloukas, P., Schuler, G.D., Gyapay, G., Beasley, E.M., Soderlund, C., Rodriguez-Tomé, P., Hui, L., Matise, T.C., McKusick, K.B., Beckmann, J.S., Bentolila, S., Bihoreau, M., Birren, B.B., Browne, J., Butler, A., Castle, A.B., Chiannilkulchai, N., Clee, C., Day, P., Dehejia, A., Dibling, T., Drouot, N., Duprat, S., Fizames, C., Bentley, D.R., et al. A physical map of 30,000 human genes. (1998) Science 282(5389):744-746.
Marazziti D, Gallo A, Golini E, Matteoni R, Tocchini-Valentini GP. Molecular cloning and chromosomal localization of the mouse Gpr37 gene encoding an orphan G-protein-coupled peptide receptor expressed in brain and testis. Genomics. 1998 Nov 1;53(3): 315-24.
PMID: 9799598Falk, P.G., Hooper, L., Midtvedt, T., and Gordon, J. Creating and maintaining the gastrointestinal ecosystem; What we know and need to know from gnotobiology. (1998) Microbiol. Mol. Biol. Rev. 62(4): 1157-1170.
Haas, C., Ryffel, B. and Le Hir, M. IFN-gamma receptor deletion prevents autoantibody production and glomerulonephritis in lupus-prone (NZBxNZW)F1 mice. (1998) J. Immunology 160(8): 3713-3718.
Hrabé de Angelis, M., and Balling, R. Large scale ENU screens in the mouse. Genetics meets Genomics. (1998) Mutation Research 400 (1-2): 25-32.
Lavenbratt, C., Inzunza, J., Petersson, S., Iwarsson, K., Schalling, M. and Ährlund-Richter, L. High performance ovary transplantation in the mouse. (1998) Scandinavian Journal of Laboratory Animal Science 2(35):53-58.
Rigby, P. W. J. The European Mouse Mutant Archive. In: Novel Systems for the Study of Human Disease - From Basic Research to Applications. OECD Publications, Paris, pp. 125-129 (1998).
Rodriguez-Tomé, P., Madsen, R., Andersen, H. and Helgesen, C. RHScoresFormat: a tool for formatting radiation hybrid data. (1998) Trends in Genetics 14(12):519.
until 1998
Di Nicola Negri E, Fabbri S, Bufardeci E, Baldi MI, Gandini Attardi D, Mattoccia E, Tocchini-Valentini GP. The eucaryal tRNA splicing endonuclease recognizes a tripartite set of RNA elements. Cell. 1997 Jun 13;89(6):859-66.
PMID: 9200604Ährlund-Richter, L., Midtvedt, T., and Iwarsson, K. Mouse embryo-banking at the Karolinska Institutet. Abstract, 25th Anniversary of 'frozen' mice: Embryo and Gamete Cryopreservation, Jackson Laboratory, Bar Harbor, ME, U.S.A. 1997.
Demengeot, J., Vasconcellos, R., Modigliani, Y., Grandien, A. and Coutinho, A. B lymphocyte sensitivity to IgM receptor ligation is independent of maturation stage and locally determined by macrophage-derived IFN-ß (1997) Intern. Immunol. 9(11): 1677-1685.
Hrabé de Angelis, M., McIntyreII, J., and Gossler, A. Maintenance of somite borders in mice requires the Delta homologue Dll1. (1997) Nature 386(6626): 717-720.
Liu, X.Z., Walsh, J., Mburu, P., Kendrick-Jones, J., Cope, M.J., Steel, K.P., and Brown, S.D. Mutations in the myosin VIIA gene cause non-syndromic recessive deafness. (1997) Nature Genetics 16(2):188-190.
Rudin, W., Eugsten, H.P., Bordmann, G., Bonato, J., Muller, M., Yamage, M., and Ryffel, B. Resistance to cerebral malaria in TNFa/b deficient mice is associated with a reduction of ICAM-1 upregulation and TH1 response. (1997) Am. J. Pathol. 150: 257-266.
Ryffel, B., Di Padova, F., Euster, H.P., Schreier, M.H., Le Hir, M., and Quesniaux, V.F.J. Lack of type 2 T-cell independent B-cell responses and defect in isotype switching in TNF-LTa deficient mice. (1997) Journal of Immunology 158(9): 2126-2133.
Winzeler, E.A., and Davis, R.W. Functional analysis of the yeast genome. (1997) Curr. Opin. Genet. Dev. 7(6):771-776.
Brown, S.D., and Peters, J. Combining mutagenesis and genomics in the mouse - closing the phenotype gap. (1996) Trends in Genetics 12(11): 433-435.
Schuler, G.D., Boguski, M.S., Stewart, E.A., Stein, L.D., Gyapey, G., Rice, K., White, R.E., Rodriguez-Tomé, P., Aggarwal, A., Bajorek, E. et al. A Gene Map of the Human Genome. (1996) Science 274(5287):540-546.
PMID:8849440Cohen, S.L., Halaas, J.L., Friedman, J.M., Chait, B.T., Bennett, L., Chang, D., Hecht, R., and Collins, F. Human leptin characterization. (Aug 1996) Nature 15;382(6592): 589.
Erickson, R.P. Mouse models of human genetic disease: which mouse is more like a man. (1996) Bioessays 18 (12): 993-998.
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Lisitsyn, N.A., Segre, J.A., Kusumi, K., Lisitsyn, N.M., Nadeau, J.H., Frankel, W.N., Wigler, M.H., and Lander, E.S. Direct isolation of polymorphic markers linked to a trait by genetically directed representational difference analysis. (1994) Nature Genetics 6 (1): 57-63.
Vitaterna, M.H., King, D.P., Chang, A.M., Kornhauser, J.M., Lowrey, P.L., McDonald, J.D., Dove, W.F., Pinto, L.H., Turek, F.W., and Takahashi, J.S. Mutagenesis and mapping of a mouse gene, Clock, essential for circadian behavior. (1994) Science 29, 264(5159):719-725.
Baldi MI, Mattoccia E, Bufardeci E, Fabbri S, Tocchini-Valentini GP. Participation of the intron in the reaction catalyzed by the Xenopus tRNA splicing endonuclease. Science. 1992 Mar 13;255(5050):1404-8.
PMID: 1542788Rinchik, E.M. Chemical mutagenesis and fine-structure functional analysis of the mouse genome. (1991) Trends in Genetics 7 :15-21.
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Carrara, G., Calandra, P., Fruscoloni, P., Doria, M., and Tocchini-Valentini, G.P. Site selection by Xenopus laevis RNAase P. (1989) Cell 58(1): 37-45.
PMID:2752421Justice, M.J., and Bode, V. Genetic analysis of mouse t haplotypes using mutations induced by ethylnitrosourea mutagenesis: the order of T and qk is inverted in t mutants. (1988) Genetics 120 (2): 533-543.
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